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#47 Reproducible pipelines and NGLess with Luis Pedro Coelho
Manage episode 265236016 series 1537951
Content provided by Roman Cheplyaka. All podcast content including episodes, graphics, and podcast descriptions are uploaded and provided directly by Roman Cheplyaka or their podcast platform partner. If you believe someone is using your copyrighted work without your permission, you can follow the process outlined here https://player.fm/legal.
NGLess is a programming language specifically targeted at next generation sequencing (NGS) data processing. In this episode we chat with its main developer, Luis Pedro Coelho, about the benefits of domain-specific languages, pros and cons of Haskell in bioinformatics, reproducibility, and of course NGLess itself.
Links:
- NGLess on GitHub
- NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language (Luis Pedro Coelho, Renato Alves, Paulo Monteiro, Jaime Huerta-Cepas, Ana Teresa Freitas, Peer Bork)
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episodes
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Manage episode 265236016 series 1537951
Content provided by Roman Cheplyaka. All podcast content including episodes, graphics, and podcast descriptions are uploaded and provided directly by Roman Cheplyaka or their podcast platform partner. If you believe someone is using your copyrighted work without your permission, you can follow the process outlined here https://player.fm/legal.
NGLess is a programming language specifically targeted at next generation sequencing (NGS) data processing. In this episode we chat with its main developer, Luis Pedro Coelho, about the benefits of domain-specific languages, pros and cons of Haskell in bioinformatics, reproducibility, and of course NGLess itself.
Links:
- NGLess on GitHub
- NG-meta-profiler: fast processing of metagenomes using NGLess, a domain-specific language (Luis Pedro Coelho, Renato Alves, Paulo Monteiro, Jaime Huerta-Cepas, Ana Teresa Freitas, Peer Bork)
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episodes
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Similar to the bioinformatics chat
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…
continue reading
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…
continue reading
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…
continue reading
This Week in Microbiology is a podcast about unseen life on Earth hosted by Vincent Racaniello and friends. Following in the path of his successful shows 'This Week in Virology' (TWiV) and 'This Week in Parasitism' (TWiP), Racaniello and guests produce an informal yet informative conversation about microbes which is accessible to everyone, no matter what their science background.
…
continue reading
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…
continue reading
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…
continue reading
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continue reading
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