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#62 Steady states of metabolic networks and Dingo with Apostolos Chalkis
Manage episode 298587346 series 1537951
Content provided by Roman Cheplyaka. All podcast content including episodes, graphics, and podcast descriptions are uploaded and provided directly by Roman Cheplyaka or their podcast platform partner. If you believe someone is using your copyrighted work without your permission, you can follow the process outlined here https://player.fm/legal.
In this episode, Apostolos Chalkis presents sampling steady states of metabolic networks as an alternative to the widely used flux balance analysis (FBA). We also discuss dingo, a Python package written by Apostolos that employs geometric random walks to sample steady states. You can see dingo in action here.
Links:
- Dingo on GitHub
- Searching for COVID-19 treatments using metabolic networks
- Tweag open source fellowships
- This episode was originally published on the Compositional podcast.
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episodes
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Manage episode 298587346 series 1537951
Content provided by Roman Cheplyaka. All podcast content including episodes, graphics, and podcast descriptions are uploaded and provided directly by Roman Cheplyaka or their podcast platform partner. If you believe someone is using your copyrighted work without your permission, you can follow the process outlined here https://player.fm/legal.
In this episode, Apostolos Chalkis presents sampling steady states of metabolic networks as an alternative to the widely used flux balance analysis (FBA). We also discuss dingo, a Python package written by Apostolos that employs geometric random walks to sample steady states. You can see dingo in action here.
Links:
- Dingo on GitHub
- Searching for COVID-19 treatments using metabolic networks
- Tweag open source fellowships
- This episode was originally published on the Compositional podcast.
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episodes
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Similar to the bioinformatics chat
How can we, humans, look at our relationship to nature differently? In season three of Going Wild, on top of stories about animals, we invite you to journey through the entire ecological web — from the tiniest of life forms to apex predators — alongside the scientists, activists and adventurers who study it. Wildlife biologist and host Dr. Rae Wynn-Grant has been studying wild animals in their natural habitats all over the world for years. Our award-winning podcast takes you inside the hidde ...
…
continue reading
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…
continue reading
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…
continue reading
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…
continue reading
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