Go offline with the Player FM app!
#9 Michael Tessler and Christopher Mason on 16S amplicon vs shotgun sequencing
Manage episode 186184556 series 1537951
Michael Tessler and Christopher Mason join me to talk about their comparison of 16S amplicon sequencing and shotgun sequencing for quantifying microbial diversity.
Links:
- The 2017 Nature paper that we discuss: Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing
Michael’s et al. 2016 paper that describes their original 16S study: A Global eDNA Comparison of Freshwater Bacterioplankton Assemblages Focusing on Large-River Floodplain Lakes of Brazil
The sequencing data for these studies is available from NCBI: PRJNA310230 (16S), PRJNA389803 (shotgun)
- Michael’s website
- The Integrative Biology & Medicine conference, featuring the talk on Postmodern Synthesis by Eugene Koonin
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episodes
Manage episode 186184556 series 1537951
Michael Tessler and Christopher Mason join me to talk about their comparison of 16S amplicon sequencing and shotgun sequencing for quantifying microbial diversity.
Links:
- The 2017 Nature paper that we discuss: Large-scale differences in microbial biodiversity discovery between 16S amplicon and shotgun sequencing
Michael’s et al. 2016 paper that describes their original 16S study: A Global eDNA Comparison of Freshwater Bacterioplankton Assemblages Focusing on Large-River Floodplain Lakes of Brazil
The sequencing data for these studies is available from NCBI: PRJNA310230 (16S), PRJNA389803 (shotgun)
- Michael’s website
- The Integrative Biology & Medicine conference, featuring the talk on Postmodern Synthesis by Eugene Koonin
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episodes
All episodes
×Welcome to Player FM!
Player FM is scanning the web for high-quality podcasts for you to enjoy right now. It's the best podcast app and works on Android, iPhone, and the web. Signup to sync subscriptions across devices.