Go offline with the Player FM app!
#20 B cell receptor substitution profile prediction and SPURF with Kristian Davidsen and Amrit Dhar
Manage episode 204718939 series 1537951
In this episode Kristian Davidsen and Amrit Dhar present their project called SPURF. SPURF can predict the B cell receptor (BCR) substitution profile of a given clonal family based on a single representative sequence from that family. SPURF works by fitting a tensor regression model to publicly available Rep-seq data.
Links:
- Preprint: Predicting B Cell Receptor Substitution Profiles Using Public Repertoire Data
- Blog post about SPURF by Erick Matsen
- SPURF on GitHub
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episodes
Manage episode 204718939 series 1537951
In this episode Kristian Davidsen and Amrit Dhar present their project called SPURF. SPURF can predict the B cell receptor (BCR) substitution profile of a given clonal family based on a single representative sequence from that family. SPURF works by fitting a tensor regression model to publicly available Rep-seq data.
Links:
- Preprint: Predicting B Cell Receptor Substitution Profiles Using Public Repertoire Data
- Blog post about SPURF by Erick Matsen
- SPURF on GitHub
If you enjoyed this episode, please consider supporting the podcast on Patreon.
70 episodes
All episodes
×Welcome to Player FM!
Player FM is scanning the web for high-quality podcasts for you to enjoy right now. It's the best podcast app and works on Android, iPhone, and the web. Signup to sync subscriptions across devices.